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Published online before print May 18, 2007
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B activity is required for Stat6 DNA binding
,
,
,


,

,
,
,1
Departments of Pediatrics and
* Microbiology and Immunology,
Wells Center for Pediatric Research and
Walther Oncology Center, Indiana University School of Medicine, and the Walther Cancer Institute, Indianapolis, Indiana, USA
1 Correspondence: Department of Pediatrics and Microbiology and Immunology, Wells Center for Pediatric Research, 702 Barnhill Drive, RI 2600, Indiana University School of Medicine, Indianapolis, IN 46202, USA. E-mail: mkaplan2{at}iupui.edu
| ABSTRACT |
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B p100 processing to NF-
B p52 in B cells but not in T cells or macrophages. IL-4 induced NF-
B p52 production requires PI-3K activity and correlates with I
B kinase phosphorylation and TNF receptor-associated factor 3 degradation. Blocking NF-
B activity eliminates IL-4-stimulated gene expression in B cells by reducing IL-4-induced DNA binding but not phosphorylation or nuclear localization of Stat6. These results describe a novel role for NF-
B in IL-4-induced signaling and gene expression.
Key Words: cytokines gene regulation transcription factors p100 processing
| INTRODUCTION |
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IL-4 stimulates several intracellular signaling pathways including the recruitment of Stat6 to the IL-4R
, where it is phosphorylated on tyrosine 641 by Jak kinases [1
, 3
]. The phosphorylated Stat6 (p-Stat6) forms dimers and translocates to the nucleus to bind DNA and activate transcription [13
14
15
]. IL-4 is unable to promote isotype switching or induce gene expression in Stat6-deficient B cells, demonstrating the requirement for Stat6 in IL-4 responses [16
17
18
]. IL-4 also stimulates the recruitment of insulin substrate-2 to the IL-4R
and the activation of PI-3K and its downstream target Akt, although the roles of these pathways in IL-4-induced gene expression are still unclear [19
20
21
].
Like the Jak-STAT pathway, NF-
B is activated by ligand triggering of surface receptors. In resting cells, NF-
B dimers are sequestered in the cytoplasm by a family of I
B inhibitors. NF-
B activation can be classified into two major pathways: the canonical and noncanonical NF-
B pathways, which are distinguished by inducible I
B degradation and p100 processing to p52, respectively [22
, 23
]. The canonical NF-
B pathway is induced rapidly and transiently by mitogens, cytokines, and microbial components, which activate the I
B kinase (IKK) complex, phosphorylating I
B molecules on serine residues and resulting in ubiquitination and proteosome-mediated degradation [24
, 25
]. Activation of the noncanonical NF-
B pathway only occurs in response to a restricted set of factors including lymphotoxin β, B cell-activating factor (BAFF), and CD40 ligand (CD40L) [26
27
28
29
30
31
32
]. These stimulants activate the NF-
B-inducible kinase, which is required for the phosphorylation and activation of IKK
[33
34
35
36
]. Once activated, IKK
phosphorylates serine residues on p100, leading to processing of the inhibitory domain [36
37
38
]. The degradation of these I
B inhibitors frees NF-
B to enter the nucleus, binds DNA, and induces transcription of target genes [22
, 39
]. Whether IL-4 stimulates NF-
B activation in primary cells has not been examined carefully.
Although IL-4 induces gene expression in B cells, the detailed molecular requirements remain unknown. In this study, we demonstrate that IL-4 induces RelB/p52-binding activity through a PI-3K-dependent pathway. Moreover, NF-
B activity is required for IL-4-induced MHCII and CD86 expression by increasing the ability of Stat6 to bind DNA. Thus, Stat6 and NF-
B activities downstream of IL-4 signaling are required for gene induction in B cells.
| MATERIALS AND METHODS |
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|---|
Inhibitors and antibodies
The source of reagents is as follows; PI-3K inhibitor LY294002, IKK-2 inhibitor IV, NF-
B inhibitor parthenolide, and anti-actin (Calbiochem, San Diego, CA, USA); wortmannin (Sigma Chemical Co., St. Louis, MO, USA); PE- or FITC-conjugated anti-CD45R, anti-MHCII, or anti-CD86 (eBiosciences, San Diego, CA, USA); anti-p-I
B
and anti-I
B
(Cell Signaling Technology, Danvers, MA, USA); anti-RelB, anti-RelA, anti-p50, anti-p52, anti-cRel, anti-TNF receptor (TNFR)-associated factor 3 (Traf3), and anti-p-IKK
/β (Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-poly (ADP-ribose) polymerase (Parp; BD PharMingen, San Diego, CA, USA); anti-p-Stat6 (Imgenex, San Diego, CA, USA); and anti-Stat6 (BD Transduction Laboratories, Lexington, KY, USA).
Transient transfection and luciferase assay
To test E
promoter activity, 4 x 105 M12.4.1 cells were transfected using Lipofectamine or Lipofectamine plus reagents (Life Technologies, Gaithersburg, MD, USA) using 1 µg reporter vector. The cells were then left in culture or stimulated with 1 µg anti-CD40 or 10 ng IL-4 for 22 h. The cells were then lysed, and luciferase assays were performed.
Isolation of B cell and macrophage populations
Spleens were dispersed into a single-cell suspension, which was treated with RBC lysis solution (Sigma Chemical Co.) for 5 min. The remaining cells were washed in supplemented RPMI 1640 as described previously [40
]. B220+ splenocytes were purified with rat anti-mouse B220 microbeads (Miltenyi Biotec, Auburn, CA, USA), according to the manufacturers protocol. The purity of selected cells was greater than 95%, as analyzed by flow cytometry (FACScan, Becton Dickinson, Franklin Lakes, NJ, USA).
Bone marrow-derived macrophages (BMDM) were derived from BM precursors, which were harvested from femur marrow of mice. Collected cells were cultured in bacterial-grade dishes with complete DMEM (Life Technologies) containing 10% heat-inactivated FBS and 20% heat-inactivated horse serum (Life Technologies) and supplemented as above. After 24 h of culture, M-CSF (Peprotech, Rocky Hill, NJ, USA) was added at 10 ng/ml, and the cells were incubated for another 7 days. At the end of the culture period, nonadherent cells were removed, and the remaining cells were used as BMDM for further experiments. The remaining adherent cells were 97% positive for macrophage surface marker CD11b by flow cytometry. For isolation of peritoneal macrophages, the peritoneal cavity was washed with 5 ml complete DMEM. The cells were then cultured for 2 h, and nonadherent cells were removed. The remaining cells were 97% CD11b+ by flow cytometry and used for further experiments.
EMSA
Nuclear extracts from unactivated or activated, purified B220+ cells were prepared using the Nuclear and Cytoplasmic Extraction Kit (Pierce Biotechnology, Rockford, IL, USA). EMSA was performed by incubating 5 µg of the nuclear extract with binding buffer (Promega, Madison, WI, USA) and the 32P-labeled probe at room temperature for 20 min (Promega). Samples were loaded onto a 4% nondenaturing polyacrylamide gel and electrophoresed in Tris borate-EDTA (TBE). Gels were dried for 1 h and visualized by autoradiography. Probes for EMSA were end-labeled with [
-32P]ATP (PerkinElmer, Wellesley, MA, USA) and T4 polynucleotide kinase (Promega), according to a protocol adapted from Promega. Briefly, 3.5 pmol probe was incubated with T4 polynucleotide kinase buffer, 10 units T4 polynucleotide kinase, and 10 µCi [
-32P]ATP at 37°C for 10 min. The reaction was stopped by adding 0.5 M EDTA and Tris-EDTA (TE) buffer. Unincorporated [
-32P]ATP was removed using a G-25 spin column equilibrated in TE buffer (Roche, Indianapolis, IN, USA).
Western blot
For Western blot analysis, nuclear and cytoplasmic extracts were separated on 4–12% gradient SDS-PAGE gel (Life Technologies) and transferred onto a Nytran membrane (Schleicher and Schuell BioSciences, Keene, NH, USA). The blots were blocked in 5% dry nonfat milk in TBST for 1 h, probed with the indicated antibodies, and detected with Western Lightning Chemiluminescence Reagent Plus (PerkinElmer).
DNA oligonucleotide affinity purification assay (DAPA)
B220+ B cells were treated with the indicated stimulus, and total cell extracts were isolated. Biotinylated Stat6 consensus sequence oligonucleotide (TGTAATTCGTGTGAATTATG) coupled to streptavidin beads or a NF-
B consensus oligonucleotide conjugated to beads (Santa Cruz Biotechnology) was incubated with 500 µg total cell extract overnight at 4°C. The complex was washed with lysis buffer, separated on SDS-PAGE gel, transferred to Nytran membrane, and Western blotted for the indicated proteins.
Surface staining and flow cytometry
Purified, splenic B220+ cells, peritoneal macrophages, or BMDM at 1–4 x 106 cells/ml were left untreated or treated with 5 µM parthenolide at 37°C for 2 h. The cells were then stimulated with 10 ng/ml IL-4 (Peprotech) or 2 µg/ml anti-CD40 Clone 3/23 (BD PharMingen) for 24 h. Cells were washed and stained in PBS with 2% BSA and 0.1% NaN3 (FACS buffer). Cells were first incubated with anti-Fc
R antibodies Clone 2.4G2 (BD PharMingen) for 10 min. Samples were then stained with antibodies conjugated directly to FITC or PE MHCII, and CD86 was incubated for 15 min at 4°C. Cells were then washed, fixed, and analyzed by flow cytometry using a FACScalibur (Becton Dickinson). Results were analyzed by WinMDI.
Analysis of gene expression
Purified B220+ cells were stimulated with IL-4 for the indicated times, and total RNA was isolated with TRIzol reagent (Life Technologies). RT reactions were done using the SuperScript First-Strand cDNA synthesis system (Life Technologies). Quantitative RT-PCR (qRT-PCR) was performed by the comparative threshold cycle method and normalized to GAPDH or β2-microglobulin. The primers used were: for GAPDH, 5'-CCAGGTTGTCTCCTGCGACT-3' and 5'-ATACCAGGAAATGAGCTTGACAAAGT-3'; for E
, 5'-TGTGTAGAACGCCGACAAG-3' and 5'-TCCGCTGAGATGAACAACTG-3'; and for A
, 5-CTGTCTGGATGCTTCCTGAGTTT-3' and 5'-AGCTATGTTTTGCAGTCCACC-3'. Semi-qRT-PCR was done for Aβ and normalized to GAPDH. The primers used for Aβ were 5'-TACATCTACAACCGGGAGGAGTACG-3'and 5'-ATTCCTGAACCAGGCACTTTGATC-3'. Taqman primers for CD86 and β2-microglobulin were from Applied Biosystems (Foster City, CA, USA).
| RESULTS |
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, Aβ, E
, and CD86 mRNA (Fig. 1B)
. To confirm that IL-4 induced transcriptional activation, we tested reporter activity in M12.4.1 B cells transfected with an E
promoter. As shown in Figure 1C
, luciferase activity was enhanced four-fold and two-fold upon anti-CD40 or IL-4 treatment, respectively. Collectively, these data demonstrate that IL-4 induces gene expression of MHCII structural genes and CD86.
|
B activity in B cells
B-binding activity from B cells examined directly ex vivo, compared with B cells from wild-type mice (Fig. 2A
). This was dependent on the presence of endogenous IL-4, as B cells from Il4–/– Stat6VT transgenic mice did not have elevated NF-
B-binding activity (Fig. 2A)
.
|
B activity in B cells. To test this directly, we treated primary mouse B220+ B cells with IL-4 for 4 h, and nuclear extracts were analyzed by EMSA. IL-4 increased total NF-
B activity in stimulated B cells compared with unstimulated B cells (Fig. 2B)
. IL-4-induced NF-
B activity in B cells was observed at 2 h after IL-4 exposure, peaked at 4 h, and decreased to basal level by 22 h (Fig. 2C)
. As IL-4 stimulates T cell and macrophage function, we wanted to determine if IL-4-induced NF-
B activity is cell type-specific or a general feature of IL-4 signaling. IL-4 did not induce NF-
B activity in CD4+ T cells or BMDM (Fig. 2B)
. The cell type-specific activation of NF-
B by IL-4 correlates with the ability of IL-4 to induce MHCII and CD86 (Fig. 1A)
.
IL-4 preferentially induces NF-
B p100 processing in B cells
To define the NF-
B pathway activated by IL-4, cytoplasmic and nuclear extracts from unactivated or
-CD40- or IL-4-activated B cells were analyzed by Western blot for molecules, which are part of the NF-
B canonical or noncanonical pathways. Phosphorylation of I
B
and its degradation is a hallmark for the NF-
B canonical pathway, and p100 processing to p52 is a characteristic of the noncanonical pathway [42
]. As shown in Figures 3A
and 3B
, and consistent with previous reports, anti-CD40 stimulation induced I
B
phosphorylation and degradation, as well as increasing NF-
B p52 levels [31
, 32
]. IL-4 stimulation did not have any effect on the phosphorylation or degradation of I
B
but did induce p52 and RelB levels in the nucleus (Fig. 3A
and 3B)
. Although CD40 stimulation decreased p100 levels in the cytoplasm, IL-4 stimulation did not affect p100 levels significantly (Fig. 3A
and 3B)
. The maintenance of p100 levels following IL-4 stimulation could be a result of a modest, IL-4-induced increase in p100 transcript (data not shown). To examine kinetic induction of specific NF-
B proteins, we measured the level of nuclear p52 and the p52-binding partner RelB following IL-4 induction. We observed an increase in nuclear p52 and RelB at 2 h after IL-4 stimulation, with levels falling gradually thereafter (Fig. 3C)
. The increase of nuclear p52 and RelB upon IL-4 is specific, as the same stimulation had minimal effect on the nuclear localization of RelA, p50, or c-Rel to the nucleus. To further confirm the ability of IL-4 to trigger the NF-
B noncanonical pathway in B cells, we performed a NF-
B consensus DAPA with whole cell extracts prepared from B cells cultured with anti-CD40, IL-4, or in the absence of stimulation. DNA-binding complexes were separated on SDS-PAGE gels and analyzed by Western blot for the levels of NF-
B factors, including p52 and RelB. As seen in Figure 3D
,
-CD40 treatment led to enhanced RelB and p52 binding to the NF-
B consensus oligonucleotides. IL-4 stimulation also resulted in increased RelB and p52 binding. In contrast, BMDM stimulated with IL-4 led to phosphorylation of Stat6 but no induction of nuclear RelB (Fig. 3E)
. There was no detectable nuclear p52 in basal or stimulated conditions, and LPS induced I
B degradation and RelA nuclear localization (Fig. 3E
and data not shown). Thus, IL-4 stimulation in B cells can induce the noncanonical NF-
B pathway to generate a p52/RelB DNA-binding complex.
|
B pathway through TNFR involve activation of IKK
and -β by phosphorylation and degradation of Traf3 [37
, 38
, 43
]. We first tested levels of p-IKK following IL-4 stimulation using immunoblot. IL-4 induced IKK
and IKKβ phosphorylation, reaching maximal levels at 2–4 h (Fig. 4A
). We then asked whether Traf3 levels are affected upon IL-4 treatment. Levels of Traf3 were decreased
50% by 2 h following treatment of B cells with IL-4, similar to what is observed in CD40-stimulated B cells [43
]. Thus, IL-4 stimulates activation of the IKK complex and degradation of Traf3 with kinetics, which mirror the time course of p100 processing.
|
B activation, we pretreated B cells with the PI-3K inhibitors LY294002 or wortmannin prior to IL-4 treatment. Corresponding with a decrease in IL-4-induced p52 nuclear protein and DNA-binding activity (Fig. 5A
and 5C
), inhibiting PI-3K activity diminished the ability of IL-4 to induce MHCII or CD86 expression (Fig. 5D
and 5E)
. In contrast, PI-3K activity was not required for IL-4-induced Stat6 phosphorylation (Fig. 5A
and 5B)
. To confirm the role of PI-3K in IL-4-induced MHCII or CD86 expression in a genetic model, we examined IL-4 responses in mice deficient in the PI-3K p85
subunit. Consistent with the overlapping function of several PI-3K
subunits, IL-4 induced MHC II, and CD86 expression was decreased partially in B cells lacking expression of p85
(Fig. 5F)
. These results suggest that PI-3K is required for IL-4-induced NF-
B activity and gene expression.
|
B activity is required for MHCII and CD86 expression in B cells
B pathway, parthenolide, or IKK-2 inhibitor would also block IL-4-induced gene expression. Treatment with parthenolide, an inhibitor of NF-
B, inhibited NF-
B activity upon anti-CD40 or IL-4 treatment, as illustrated by the loss of NF-
B binding in a gel-shift assay, phosphorylation and degradation of I
B
, and levels of nuclear RelB (Fig. 6A
). Parthenolide and IKK-2 inhibitor IV, respectively, had only minor effects or did not affect levels of IL-4-induced p-Stat6 in the nucleus, although both inhibitors decreased Stat6 DNA binding, as assessed by gel shift or DAPA (Figs. 5B
and 6A
and 6C)
. The IKK-2 inhibitor IV also abolished the ability of IL-4 to induce p52 processing in a NF-
B DAPA (Fig. 5C)
. DAPA also showed that inhibition of PI-3K decreased IL-4-induced Stat6 DNA-binding activity (Fig. 6B
and 6C)
. The dependence of Stat6 DNA binding on NF-
B activity would predict that NF-
B inhibitors would block IL-4-induced gene expression. As shown in Figure 6D
, pretreatment of B cells with parthenolide or IKK-2 inhibitor but not DMSO ablated the ability of IL-4 to induce MHCII or CD86 expression. Taken together, these data indicate that IL-4-induced NF-
B activity in B cells plays a novel role in gene induction.
|
| DISCUSSION |
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B pathway, and this activity is required for IL-4-induced MHCII and CD86 expression by altering Stat6 DNA-binding activity.
Based on data here, we propose the following model for IL-4-induced NF-
B activity. IL-4 induces PI-3K activity and Traf3 degradation, which in turn mediates the activation of the IKK complex. Akt, a target of PI-3K, mediates IKK
phosphorylation at threonine 23 to subsequently activate NF-
B activity through the processing of NF-
B p100 to NF-
B p52 [44
45
46
]. This allows active NF-
B complexes to enter the nucleus and interact with activated Stat6 to facilitate DNA binding. Although we observe that IL-4 predominantly activates the noncanonical pathway involving RelB:p52, it is possible that other NF-
B family members can mediate this function if they are present in basal levels or if activated by another ligand. Indeed, B cells deficient in p50 or p52 have normal, IL-4-stimulated expression of MHCII and CD86 (Estefania Vazquez and Ulrich Siebenlist, personal communication, and data not shown). As RelB can form heterodimers with p52 or p50 [42
], p50:RelB could compensate for p52 deficiency. Altered B cell development in mice doubly deficient in p50 and p52 would prevent this analysis in cells lacking both subunits [24
].
Given the extensive analysis of IL-4, B cell signaling, and NF-
B in the literature, it is surprising that these observations have not been made previously. There could be several reasons for this. One is that few studies have been performed examining IL-4 signaling with primary B cells. Another issue is the somewhat delayed activation of the pathway; we see peak activation at 2–4 h, and Stat6 is activated fully by 30 min after IL-4 stimulation. This raised some concern that the effect was not direct. However, we did not observe IL-4-induced expression of other ligands, which are known to induce NF-
B activity, including BAFF, CD40L, and IL-1 (data not shown). It is also possible that NF-
B activation could be caused by contamination in our preparation of IL-4. However, we observed similar responses with multiple stock solutions of IL-4, and use of anti-IL-4R
eliminated IL-4-induced p100 processing (data not shown). Moreover, blockade of PI-3K activity, which IL-4 is known to activate, is required for NF-
B induction and IL-4-induced gene expression. Further analysis of the proteins involved in the noncanonical NF-
B pathway will be required to elucidate this issue further.
The effect of blocking IL-4-induced NF-
B activity, with parthenolide, an IKK inhibitor or PI-3K inhibitor, on Stat6 DNA-binding activity is surprising. It has been shown previously that parthenolide can inhibit Stat6 DNA binding, and this was proposed to function through impaired nuclear transport [47
]. Our results suggest that nuclear transport is not affected, and the use of additional inhibitors of NF-
B or NF-
B-activating pathways yielded the same effect. Moreover, use of a more selective inhibitor of the p52 pathway has been shown recently to inhibit IL-4-induced I
germline transcription [48
]. NF-
B could mediate these effects in several ways. Stat6 and NF-
B are known to associate and synergize in several cell types including B cell lines in the induction of I
1, I
, lymphotoxin-
, and activation-induced deaminase [49
50
51
52
53
54
55
56
57
]. It is possible this association is necessary for Stat6 DNA binding. It is also possible that there is cooperative binding of the two transcription factors to DNA. However, in the I
1 promoter, where Stat6 and NF-
B have been shown to be important for gene induction, mutation of NF-
B-binding sites in a transgene does not abolish synergism [58
]. This suggests that NF-
B could have functions independent of DNA binding. We do not observe the converse, that Stat6 is required for NF-
B activation. In Stat6-deficient B cells, IL-4-induced NF-
B activity was normal (data not shown). Future experiments will explore these phenomena further.
The cell type specificity of IL-4-induced NF-
B activity is intriguing and may provide some understanding of the cell type-specific effects of IL-4. NF-
B induction by IL-4 correlates with the ability of IL-4 to induce MHCII and CD86 expression in B cells but not in BMDM. How the NF-
B pathway is activated by IL-4 only in B cells is not clear. The mechanism may include cell type-specific expression of some components of the signaling system including IKK complex proteins, which dictate the activation of NF-
B pathways [45
]. Regardless, the induction of NF-
B in B cells may contribute to the cell type-specific effects of IL-4 in combination with Stat6 or other transcription factors such as IFN regulatory factor 4 and Stat5 [59
, 60
].
The ability of IL-4 to induce surface expression of MHCII is likely a result of multiple mechanisms, including increased transcriptional activity, enhanced mRNA half-life, stabilization of surface expression, and transport of intracellular MHCII to the cell surface [9 , 61 ]. Our studies illustrate that treatment of B cells with IL-4 increases mRNA levels of the MHCII genes. The discrepancy between our results and other reports might be a result of the time difference in which the cells were treated with IL-4: 12 h post-IL-4 treatment verses our treatment of 3 h [62 ]. As seen in Figure 1B , after 6 h of IL-4 treatment, Class II mRNA returns to near-basal levels and continues to decrease thereafter (data not shown). IL-4-induced MHCII expression is not a result of indirect induction of the Class II transactivator (data not shown and ref. [62 ]). Our data are consistent with previous work by several groups [63 , 64 ], in which IL-4 enhances MHCII expression in part by up-regulating the transcriptional activity of its promoter and mRNA expression.
In summary, we have demonstrated the ability of IL-4 to induce NF-
B activity to regulate gene expression in B cells. This pathway may be a regulatory component of multiple cytokine-induced genes and contribute to cell type-specific effects of IL-4. It further defines a downstream effector of IL-4-stimulated PI-3K activity. Together, these data provide a further understanding of IL-4 signaling and facilitate cell type-specific manipulation of responses in B cell.
| ACKNOWLEDGEMENTS |
|---|
Received November 29, 2006; revised April 30, 2007; accepted May 1, 2007.
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