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(Journal of Leukocyte Biology. 2000;68:345-350.)
© 2000 by Society for Leukocyte Biology

HIV-1 can be recovered from a variety of cells including peripheral blood monocytes of patients receiving highly active antiretroviral therapy: a further obstacle to eradication

Suzanne M. Crowe and Secondo Sonza

AIDS Pathogenesis Research Unit, Macfarlane Burnet Centre for Medical Research, Melbourne, Victoria, Australia

Correspondence: Prof. Suzanne M. Crowe, Macfarlane Burnet Centre for Medical Research, Yarra Bend Road, Fairfield, Victoria 3078, Australia. E-mail: tolli{at}burnet.edu.au


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
During highly active antiretroviral therapy (HAART), HIV-1 can still persist in circulating, resting CD4+ T lymphocytes, lymph node mononuclear cells, and seminal cells of patients despite sustained suppression of plasma viremia to undetectable levels. Sanctuary sites where antiretroviral drug penetration is not optimal may allow local HIV-1 infection of cells within and passing through these tissues. Factors such as imperfect drug adherence due to complicated drug regimens may also result in tissue compartments with suboptimal drug concentrations allowing viral replication. We have examined blood monocytes from HIV-1-infected subjects being effectively treated with HAART to determine virus carriage in these cells. Monocytes were purified from peripheral blood of patients with plasma HIV-1 RNA below 50 copies/mL and who had maintained levels of plasma RNA below detection for 3 months or more. Replication-competent virus could be recovered from the majority of monocyte populations by co-culture with CD8-depleted, PHA-activated, peripheral blood mononuclear cells. Sequencing of the reverse transcriptase and protease genes of the recovered viruses did not reveal resistance to both reverse transcriptase and protease inhibitors. Continued new infection of this transitory, circulating population of cells even during prolonged, effective HAART most likely reflects ongoing, low-level HIV-1 replication within cellular reservoirs and sanctuary sites in the body.

Key Words: reservoirs • macrophages • lymphocytes • persistence


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
Since the introduction of highly active antiretroviral therapy (HAART, a treatment regimen comprising a combination of at least three antiretroviral drugs and usually including a member of the protease inhibitor class), there has been a significant decline in the morbidity and mortality of patients with human immunodeficiency virus (HIV-1) infection. This has resulted from the control of viral replication (measured as suppression of plasma HIV RNA to less than 50 copies/mL), allowing at least partial reconstitution of the immune system.

The availability of HAART has also provided a useful tool for the mathematical modeling of the kinetics of plasma HIV-1 decay and CD4 T cell recovery. Treatment with HAART has been shown in early modeling studies to initially reduce plasma viral load by 100- to 1000-fold within the first few weeks of therapy (phase I), suggesting that most of the circulating HIV-1 within plasma is produced by short-lived, productively infected cells (half-lives estimated to be about 1 day). A slower phase II decline in viral load reflects the decay of long-lived infected cell populations (half-lives estimated to be 1–4 weeks). An alternate hypothesis for this slower phase of plasma virus decay suggests that the clearance of lymphocytes and macrophages is essentially similar, and that a decline in antigen-driven immune responses (particularly effector cells) is responsible for the slower phase of viral decay [1 ]. The early modeling studies allowed a prediction of eradication of HIV-1 from infected individuals with 2.3 to 3.1 years of continuous HAART [2 , 3 ]. However, despite sustained viral suppression for prolonged periods of time, eradication of HIV-1 from such patients has not been achieved.

A number of factors have been identified that make eradication of HIV-1 by HAART more difficult. These include the difficulties of adhering to complex antiretroviral regimens of drugs with often low margins for pharmacokinetic deviation, the identification of cellular reservoirs that survive despite HAART, and the potential existence of sanctuary sites within the body where antiretroviral drug levels are not optimal. In a recent review, the authors suggested that attention should be focused on why potent drug regimens fail to completely suppress HIV-1 and propose that pharmacokinetics, cellular concentrations of drugs, and patient adherence may be of greater importance than drug penetration into anatomical sanctuaries [4 ].


    CELLULAR RESERVOIRS VERSUS ANATOMICAL SANCTUARY SITES
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
HIV-1 may be inaccessible to HAART as a result of infection within certain cell types or in certain tissues. There are often significant differences in viral load detected in plasma and cerebrospinal fluid [5 ], or between plasma and semen [6 , 7 ], suggesting that there is compartmentalization of HIV-1 replication in vivo. Sanctuary sites (those anatomic sites that are either inaccessible to HAART or where drug concentrations may be lower than those in plasma as a result of tissue-blood endothelial barriers) such as brain, testes, and retina [8 9 10 ] may harbor cells containing HIV-1, allowing local viral replication. Certain cells containing proviral HIV-1 DNA have a very slow turnover, such as resting CD4 lymphocytes and tissue macrophage populations, especially microglia. Once infected the latter cells represent a stable viral reservoir, as microglial turnover is virtually non-existent [11 ], and given their location, may escape the effects of HAART.

Replication-competent HIV-1 has been isolated from seminal cells (which comprise spermatozoa, germ cell precursors, epithelial cells, macrophages, and T cells) of patients on HAART with no detectable HIV RNA in plasma, suggesting that the genital tract may be a reservoir of HIV in infected men [10 ]. Whether cervical or vaginal secretions provide a viral reservoir in infected women receiving HAART is not known.

Within the brain, microglia, which express both CCR5 and CCR3, can be infected with HIV-1 and have a relatively long half-life [11 ]. Other long-lived cells such as bone marrow-derived dendritic cells within the choroid plexus can also be infected with HIV-1 and serve as a cellular reservoir [12 ]. Discrepancies between plasma and cerebrospinal fluid (CSF) HIV RNA levels, together with the observation that infection within the central nervous system (CNS) results in an increase in CSF viral load [13 ], suggests local production of HIV-1 [5 ].


    LYMPHOCYTES AS A VIRAL RESERVOIR
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
Several years ago three groups identified long-lived latently infected resting CD4-expressing memory (CD45RO+) T cells as a latent reservoir of HIV-1 in patients who had received prolonged courses of HAART with sustained viral load suppression [14 15 16 ]. Infectious virus was able to be recovered from these cells through the use of different techniques. There being no evidence of mutations conferring drug resistance, these observations were not considered to be due to drug failure, but rather to persistence of long-lived and latently infected T cell populations.

This reservoir is established early in the course of HIV infection, as efforts to eradicate HIV-1 by commencing HAART soon after infection have failed. These cells have been isolated from patients who commenced HAART within 10 days of development of symptoms of acute HIV infection [17 ]. The cellular population is estimated only to be in the range of 105 cells per infected individual. However, initial optimism for eradication of HIV-1 with HAART has been dampened by estimates of the half-life of HIV-1 within these cells, ranging from 6.3 months [18 ] to 44 months [19 ], requiring as low as 7–10 years to over 60 years of continuous therapy and complete viral suppression in order to achieve viral eradication. The decay of the latent reservoir of HIV-1 has recently been shown to be inversely correlated with the extent of residual viral replication, in that the decay rate of 6.3 months is only found in patients with continuous viral suppression below 50 copies/mL; intermittent episodes of detectable virus result in prolonging the decay time [20 ].

A reduction in unintegrated viral DNA in peripheral blood mononuclear cells (PBMCs) has been reported with successful HAART regimens [21 ]. This is to be expected because unintegrated viral DNA has a short half-life in vivo and its presence indicates ongoing viral replication. However, the persistence of unintegrated DNA in cells from patients despite several years of plasma HIV RNA suppression to below detectable levels suggests continuing viral replication at low levels [16 ]. To achieve eradication, HAART would need to impact on the level of integrated HIV-1 DNA within infected cells in blood and tissues. In a study of patients treated for 48 weeks the integrated HIV-1 DNA within PBMCs did not decrease [22 ].


    HIV-1 CAN BE RECOVERED FROM MONOCYTES OF PATIENTS ON HAART WITH VIRAL SUPPRESSION
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
Since the discovery that cells of macrophage lineage could serve as a target for HIV replication, a number of authors have stated that these cells provide an important reservoir of HIV-1 in infected patients. This was largely based on knowledge of the pathogenesis of other lentivirus infections [23 , 24 ] and, as with visna, monocytes are not as susceptible to infection with HIV-1 as macrophages [25 ]. Monocyte-derived macrophages and tissue macrophages have been found to be susceptible to HIV-1 infection in vitro, and their long lifespan together with lack of significant cytopathic effect would support their role as a viral reservoir [25 26 27 ]. Although there has been some minor controversy within the literature, the majority of reports have demonstrated relatively high numbers of infected macrophages within tissues including brain, lymph node, spleen, lung, and liver, but low numbers only within blood, suggesting that tissue macrophages but not peripheral blood monocytes are an important viral reservoir in HIV-1-infected individuals [28 29 30 31 32 33 34 35 ].

Infectious virus has been recovered not only from latently infected T cells and seminal cells but also from monocytes isolated from the blood of HIV-1-infected individuals treated with HAART for periods up to 80 weeks who have undetectable plasma viral loads [Mutimer et al., unpublished results]. Similar to the reports for latently infected T cells, we could find no evidence of multiple drug resistance or of laboratory contamination of samples that might explain the recovery of virus. All mutations in both the reverse transcriptase and protease genes that have been reported to be associated with drug resistance were examined. Although patterns of virus recovery varied from patient to patient, HIV-1 could generally be detected within culture supernatants by 14–21 days of co-culture (Table 1 ). There was no apparent correlation between the period of viral suppression by HAART and the ability to recover infectious virus from the patient’s monocytes. Because monocytes have a relatively short period of circulation within blood before differentiation into various tissue macrophages, it is unlikely that these cells represent a latently infected cellular reservoir. Rather, these and other findings from our work suggest that the monocytes were recently infected from reservoirs of virus within the body. The CNS is continuously patrolled by small numbers of T cells and monocytes and such trafficking in and out of the CNS or other sanctuary sites provides the potential for new infection to occur [36 ]. Although we and others have shown that monocytes are much less permissive to infection in vitro when first isolated than after differentiation in culture [25 ], a very small proportion of monocytes in circulation (variously estimated at between 0.1 and 0.001%) can harbor virus throughout the course of infection [27 , 33 ]. Whether these cells represent a permissive subset of monocytes is unknown. Other investigators have also recently detected evidence of ongoing viral replication in monocytes from HIV-1-infected persons who have had viral suppression by HAART for periods of up to 3 years [37 ].


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Table 1. Recovery of Replication-Competent HIV-1 from the Purified Monocytesa of Patients on HAART with Undetectable Viral Loads After Co-culture with CD8-Depleted PBMCsb

 
The lifespan of tissue macrophages varies considerably according to cell type and location, with the half-life of human alveolar macrophages and perivascular macrophages within the brain estimated to be about 3 months, whereas that of microglia ranges up to decades [38 ]. Reverse transcriptase inhibitors are unable to control replication within chronically infected cell populations such as macrophages [39 ]. The only component of HAART that has activity against chronically infected cells including macrophages are the various protease inhibitors [40 , 41 ]. However, relatively high concentrations of protease inhibitors are required to inhibit HIV-1 replication within chronically infected macrophages, when compared to chronically infected T cells [42 ], and the blood-brain barrier prevents the efficient delivery of these drugs to the CNS. Thus the concentration of protease inhibitors, at least as measured within CSF, is significantly lower than plasma concentrations, and lower than the inhibitory concentrations required to prevent HIV-1 replication within cells of macrophage lineage within the brain.


    MECHANISM OF VIRAL PERSISTENCE IN THE PRESENCE OF HAART
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
Several mechanisms may explain the failure to achieve eradication of HIV in patients with plasma viral load levels that are undetectable by ultrasensitive assays. There may be a population of latently infected cells, including memory T cells that can persist during prolonged periods of HAART, which can be reactivated in a certain microenvironment to release infectious virions. There may also be new infection and ongoing, low levels of viral replication occurring in cells that are either resident in anatomical sanctuary sites or in cells that passage through such sites. Such extremely low levels of viral replication could occur within certain cells without appreciably increasing the plasma viral load, but allowing continued infection and replication of virus within a small number of local cells [43 ].

HIV-1 replication within the CNS may continue in the presence of HAART because of lack of penetration across the blood-CSF and blood-brain barriers. Although most studies only involve small numbers of patients, the evidence to date suggests poor penetration of protease inhibitors [44 45 46 ], although nucleoside analogs such as abacavir and zidovudine and non-nucleoside reverse transcriptase inhibitors such as nevirapine have good penetration [47 ]. The low penetration of protease inhibitors across the blood-brain endothelial barrier into the CNS is mostly due to their highly lipophilic nature, together with their large molecular size [48 ]. Expression of the ATP-dependent, efflux membrane drug transporter, at the level of the blood-brain barrier has also been postulated to limit entry of the protease inhibitors at this site [49 ].

Small increases in the level of HIV RNA in plasma that are sporadically observed in many patients receiving HAART may be due to alterations in cytokine production within the microenvironment of the lymph node, resulting in short-lived increases in HIV-1 replication. This would fit with speculation that the recurrence of viremia after discontinuation of HAART may result from cellular stimulation by cytokines such as interleukin-2 (IL-2) [50 ].


    EVIDENCE OF VIRAL PERSISTENCE IN THE PRESENCE OF HAART
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
There is evidence from a number of laboratories of at least a degree of ongoing viral replication and/or the maintenance of a viral reservoir in the presence of HAART and viral suppression. Levels of proviral DNA within PBMCs do not significantly decline during HAART, indicating the persistence of a viral reservoir [22 ]. There is also evidence of genetic sequence evolution over time (without evidence of development of drug-resistant genotypes) in patients on HAART with undetectable plasma virus, suggesting ongoing HIV-1 replication [18 , 51 ]. Unintegrated viral DNA has been detected within the resting T cell population despite viral suppression being below the limits of the assays, indicating recent infection [16 ]. Unspliced HIV RNA has been detected in the PBMCs of infected persons receiving HAART and with viral suppression, indicating transcriptional activity within the cells harboring HIV-1 [52 ]. One recent study reporting continuing low-level viral replication in patients on HAART has found that the levels of unspliced HIV-1 RNA and proviral DNA in PBMCs reach a steady state about 300 days after commencing HAART [53 ]. Low-level viral replication was confirmed by finding labile products of viral infection such as short half-life, circular forms of HIV-1 DNA containing one or two long-terminal repeats [53 , 54 ]. Multiply spliced and unspliced RNA were not proportionally generated, emphasizing that residual HIV-1 replication is complicated in these patients [53 ]. The demonstration in other similar patients of multiply spliced RNA within PBMCs provides further evidence of productive infection [55 ]. In cells from patients with incomplete viral suppression, the presence of sequence changes consistent with viral evolution has been reported, and provides evidence for ongoing replication [56 ].


    OBSTACLES TO ERADICATION OF HIV
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
Currently available antiretroviral drugs, including those used in HAART combinations, do not target transcription of proviral HIV DNA to RNA. Thus viral transcription may potentially proceed within latently infected cells, relying on inhibition of viral assembly by protease inhibitors to prevent production of new infectious progeny virions. In sites where protease inhibitors may not reach adequate levels such as within the CNS, chronically infected cells of macrophage lineage may be responsible for continuing low-level local production of HIV.

Immune enhancement should theoretically assist in eradicating HIV by activation of the pool of latently infected T cells in patients on HAART (as shown in vitro [50 ]). This would result in productively infected T cells, which have a short half-life in vivo [3 ], releasing infectious virions whose further replication can be adequately controlled by HAART [reviewed in ref. 57 ]. Because HAART can also reduce HIV antigen levels as a result of viral suppression, and thus reduce HIV-1-specific immune responses, IL-2 could also theoretically augment immune responses to HIV-1. Results from a small uncontrolled study suggest that the number of latently infected T cells may be reduced by intermittent treatment with an immune stimulator such as IL-2 in the presence of continuous HAART [57 ].


    SUMMARY
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 
Although HAART has provided extraordinary clinical benefit to HIV-1-infected patients in terms of lowering morbidity and mortality, the current drug regimens are unable to completely block HIV-1 replication. Replication-competent HIV-1 has been recovered from resting memory T cells, seminal cells, and monocytes of patients receiving HAART who have plasma HIV RNA levels below 50 copies/mL. Residual HIV-1 replication is likely to arise from a combination of activation of long-lived latently infected cells, new infection of cells that come into contact with chronically infected cells or with virus released during new, low-level bursts of viremia. Cells within anatomic sanctuary sites such as the brain may harbor replication-competent HIV-1. Drugs such as protease inhibitors that are effective in inhibiting replication of HIV-1 within chronically infected cells such as macrophages do not readily cross the blood-brain barrier, resulting in potentially lower concentrations of antiretroviral drug within these sites and thus potentially allowing continued viral replication. Given the range of cells that are being discovered as cellular reservoirs of HIV, and their differing biology, it may be simplistic to think that immune stimulation with cytokines such as interleukin-2 will result in eradication of HIV-1.


    ACKNOWLEDGEMENTS
 
Funding for this work was provided by the Macfarlane Burnet Centre Research Fund, the National Health and Medical Research Council, and the National Centre for HIV Virology Research.


    REFERENCES
 TOP
 ABSTRACT
 INTRODUCTION
 CELLULAR RESERVOIRS VERSUS...
 LYMPHOCYTES AS A VIRAL...
 HIV-1 CAN BE RECOVERED...
 MECHANISM OF VIRAL PERSISTENCE...
 EVIDENCE OF VIRAL PERSISTENCE...
 OBSTACLES TO ERADICATION OF...
 SUMMARY
 REFERENCES
 

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